en Experimental Neurobiology

Cited by CrossRef (39)

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  3. Jayun Choi, Taeyong Park, Seung Yul Lee, Jinsol Yang, Chaok Seok. GalaxyDomDock: An Ab Initio Domain–domain Docking Web Server for Multi-domain Protein Structure Prediction. Journal of Molecular Biology 2022;434:167508
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  4. Tanjin Barketullah Robin, Nurul Amin Rani, Nadim Ahmed, Anindita Ash Prome, Md Nazmul Islam Bappy, Foeaz Ahmed. Identification of novel drug targets and screening potential drugs against Cryptococcus gattii: An in silico approach. Informatics in Medicine Unlocked 2023;38:101222
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  5. Vyacheslav K. Kindop, Alexander V. Bespalov, Victor V. Dotsenko, Azamat Z. Temerdashev, Vladimir K. Vasilin, Nawras T. Jassim, Evgeniy E. Netreba, Sergey N. Ovcharov, Nicolai A. Aksenov, Inna V. Aksenova. 1,3-Dithiocyanatoacetone: improved synthesis, detailed structural studies and in silico docking studies. Res Chem Intermed 2024;50:5039
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  6. Sumin Lee, Seeun Kim, Gyu Rie Lee, Sohee Kwon, Hyeonuk Woo, Chaok Seok, Hahnbeom Park. Evaluating GPCR modeling and docking strategies in the era of deep learning-based protein structure prediction. Computational and Structural Biotechnology Journal 2023;21:158
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  7. Md. Masudur Rahman Munna, Md Ariful Islam, Saima Sajnin Shanta, Masuma Akter Monty. Structural, functional, molecular docking analysis of a hypothetical protein from Talaromyces marneffei and its molecular dynamic simulation: an in-silico approach . Journal of Biomolecular Structure and Dynamics 2024:1
    https://doi.org/10.1080/07391102.2024.2314264
  8. Zhiwen Wang, Yunpeng Shen, Longyun Cao, Hao Li, Haifeng Li, Linjie Song, Xintian Ma, Chen Dong. Enhancing the Catalytic Activity of Geranylgeranyl Diphosphate Synthase through Ancestral Sequence Reconstruction and Semirational Design. J. Agric. Food Chem. 2024;72:19187
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  9. Priyanshu Nema, Shivangi Agarwal, Shivam Kumar Kori, Ajay Kumar, Varsha Kashaw, Arun K. Iyer, Sushil Kumar Kashaw. Exhaustive computational studies on pyrimidine derivatives as GPR119 agonist for the development of compounds against NIDDM. Futur J Pharm Sci 2024;10
    https://doi.org/10.1186/s43094-024-00701-6
  10. Victor V. Dotsenko, Alexander V. Bespalov, Anna E. Sinotsko, Azamat Z. Temerdashev, Vladimir K. Vasilin, Ekaterina A. Varzieva, Vladimir D. Strelkov, Nicolai A. Aksenov, Inna V. Aksenova. 6-Amino-4-aryl-7-phenyl-3-(phenylimino)-4,7-dihydro-3H-[1,2]dithiolo[3,4-b]pyridine-5-carboxamides: Synthesis, Biological Activity, Quantum Chemical Studies and In Silico Docking Studies. IJMS 2024;25:769
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  11. Siham O. Elshafei, Nuha A. Mahmoud, Yassir A. Almofti. Immunoinformatics, molecular docking and dynamics simulation approaches unveil a multi epitope-based potent peptide vaccine candidate against avian leukosis virus. Sci Rep 2024;14
    https://doi.org/10.1038/s41598-024-53048-6
  12. Barumand Hosseini, Mandana Behbahani, Ghasem Dini, Hassan Mohabatkar, Mehrnaz Keyhanfar. Investigating the anti-streptococcal biofilm effect of ssDNA aptamer-silver nanoparticles complex on a titanium-based substrate. RSC Adv. 2022;12:24876
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  13. Gustavo Almeida de Carvalho, Paul Magogo Tambwe, Lucas Rodrigues Couto Nascimento, Bruna Kelly Pedrosa Campos, Raphaela Almeida Chiareli, Guilhermino Pereira Nunes Junior, Ricardo Menegatti, Renato Santiago Gomez, Mauro Cunha Xavier Pinto. In silico evidence of bitopertin’s broad interactions within the SLC6 transporter family. 2024;76:1199
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  14. Abu Tayab Moin, Nurul Amin Rani, Md. Asad Ullah, Rajesh B. Patil, Tanjin Barketullah Robin, Nafisa Nawal, Talha Zubair, Syed Iftakhar Mahamud, Mohammad Najmul Sakib, Nafisa Nawal Islam, Md. Abdul Khaleque, Nurul Absar, Abdullah Mohammad Shohael, Sheikh Arslan Sehgal. An immunoinformatics and extended molecular dynamics approach for designing a polyvalent vaccine against multiple strains of Human T-lymphotropic virus (HTLV). PLoS ONE 2023;18:e0287416
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  15. Mohamed E. Hasan, Aya Samir, Magdy M. Khalil, Medhat W. Shafaa. Bioinformatics approach for prediction and analysis of the Non-Structural Protein 4B (NSP4B) of the Zika virus. Journal of Genetic Engineering and Biotechnology 2024;22:100336
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  16. Yaowen Chang, Han Liu, Wei Tian, Zunxue Chang. Production of 14α-Hydroxy Progesterone Using a Steroidal Hydroxylase from Cochliobolus lunatus Expressed in Escherichia coli. Catalysts 2024;14:247
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  18. Tania Diaz-Vidal, Raúl Balam Martínez-Pérez, Luis Carlos Rosales-Rivera. Computational insights of the molecular recognition between volatile molecules and odorant binding proteins from the red palm weevil Rhynchophorus ferrugineus . Journal of Biomolecular Structure and Dynamics 2024;42:11285
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  19. Amanda de Oliveira Matos, Thaís Cristina Vilela Rodrigues, Sandeep Tiwari, Pedro Henrique dos Santos Dantas, Geraldo Rodrigues Sartori, Vasco Ariston de Carvalho Azevedo, João Herminio Martins Da Silva, Siomar de Castro Soares, Marcelle Silva-Sales, Helioswilton Sales-Campos. Immunoinformatics-guided design of a multi-valent vaccine against Rotavirus and Norovirus (ChRNV22). Computers in Biology and Medicine 2023;159:106941
    https://doi.org/10.1016/j.compbiomed.2023.106941
  20. Gaurav Kumar, Naimat K. Bari, Jagadish P. Hazra, Sharmistha Sinha. A Major Shell Protein of 1,2‐Propanediol Utilization Microcompartment Conserves the Activity of Its Signature Enzyme at Higher Temperatures. ChemBioChem 2022;23
    https://doi.org/10.1002/cbic.202100694
  21. Sohee Kwon, Chaok Seok. CSAlign and CSAlign-Dock: Structure alignment of ligands considering full flexibility and application to protein–ligand docking. Computational and Structural Biotechnology Journal 2023;21:1
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  22. Hyeonuk Woo, Yubeen Kim, Chaok Seok, Dina Schneidman. Protein loop structure prediction by community-based deep learning and its application to antibody CDR H3 loop modeling. PLoS Comput Biol 2024;20:e1012239
    https://doi.org/10.1371/journal.pcbi.1012239
  23. Samuel Mawuli Adadey, Elvis Twumasi Aboagye, Kevin Esoh, Anushree Acharya, Thashi Bharadwaj, Nicole S. Lin, Lucas Amenga-Etego, Gordon A. Awandare, Isabelle Schrauwen, Suzanne M. Leal, Ambroise Wonkam. A novel autosomal dominant GREB1L variant associated with non-syndromic hearing impairment in Ghana. BMC Med Genomics 2022;15
    https://doi.org/10.1186/s12920-022-01391-w
  24. Mohammad Mohasin Miah, Nuzhat Tabassum, Maliha Afroj Zinnia, Abul Bashar Mir Md. Khademul Islam. Drug and Anti-Viral Peptide Design to Inhibit the Monkeypox Virus by Restricting A36R Protein. Bioinform Biol Insights 2022;16
    https://doi.org/10.1177/11779322221141164
  25. Muhammad Zaheer, Nouman Ali, Hasnain Javed, Rimsha Munir, Nazia Jamil. Uncovering the impact of SARS-CoV2 spike protein variants on human receptors: A molecular dynamics docking and simulation approach. Journal of Infection and Public Health 2023;16:1544
    https://doi.org/10.1016/j.jiph.2023.07.011
  26. Shovan Naskar, Hitesh Harsukhbhai Chandpa, Shalini Agarwal, Jairam Meena. Super epitope dengue vaccine instigated serotype independent immune protection in-silico. Vaccine 2024;42:3857
    https://doi.org/10.1016/j.vaccine.2024.04.009
  27. Lanfang Zhu, Xiangjie Cui, Zhiling Yan, Yufen Tao, Lei Shi, Xinwen Zhang, Yufeng Yao, Li Shi. Design and evaluation of a multi-epitope DNA vaccine against HPV16. Human Vaccines & Immunotherapeutics 2024;20
    https://doi.org/10.1080/21645515.2024.2352908
  28. Sangwoo Park, Chaok Seok. GalaxyWater-CNN: Prediction of Water Positions on the Protein Structure by a 3D-Convolutional Neural Network. J. Chem. Inf. Model. 2022;62:3157
    https://doi.org/10.1021/acs.jcim.2c00306
  29. Hadi Esmaeili Gouvarchin Ghahleh, Behzad Shahbazi, Mohammad Hossein Ataee, Mahdieh Farzanehpour, Ali Najafi. Beyond prevention: in silico designing a one-two punch novel therapeutic vaccine candidate against major oncoproteins of HPV 16, 18, 31, and 45 and subsequent cervical cancer. Molecular Simulation 2024;50:1583
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  31. Zeynab Bayat, Tina Mazaheri, Homa Farhadifard, Amir Taherkhani, Saeed Mohammadi. Mechanisms Involved in Therapeutic Effects of Scutellaria baicalensis Georgi in Oral Squamous Cell Carcinoma Based on Systems Biology and Structural Bioinformatics Approaches. BioMed Research International 2024;2024:1
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  32. Jun-Kyu Byun, John A. Vu, Siou-Luan He, Jyan-Chyun Jang, Karin Musier-Forsyth. Plant-exclusive domain of trans-editing enzyme ProXp-ala confers dimerization and enhanced tRNA binding. Journal of Biological Chemistry 2022;298:102255
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  33. Yosef Masoudi-Sobhanzadeh, Mohammad M. Pourseif, Ava Khalili-Sani, Behzad Jafari, Aysan Salemi, Yadollah Omidi. Deciphering anti-biofilm property of Arthrospira platensis-origin peptides against Staphylococcus aureus. Computers in Biology and Medicine 2023;160:106975
    https://doi.org/10.1016/j.compbiomed.2023.106975
  34. Emmanuel Oladiran Amos, Olufemi Samuel Araoyinbo, Enoch Olanrewaju Akinleye, Sulieman Oluwaseun Alakanse, Afolabi Olakunle Bamikole, Olatunji Matthew Kolawole. Immunoinformatics design of multi-epitope vaccine using surface cell antigen OmpB and heat shock protein GroEL against rickettsioses. Informatics in Medicine Unlocked 2023;43:101411
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  35. Fatemeh Velayatipour, Hossein Tarrahimofrad, Javad Zamani, Fatemeh Fotouhi, Saeed Aminzadeh. In-vitro antimicrobial activity of AF-DP protein and in-silico approach of cell membrane disruption . Journal of Biomolecular Structure and Dynamics 2024:1
    https://doi.org/10.1080/07391102.2024.2308763
  36. Mostafa Omidian, Zohreh Mostafavi-Pour, Marzieh Asadi, Meysam Sharifdini, Navid Nezafat, Ali Pouryousef, Amir Savardashtaki, Mortaza Taheri-Anganeh, Fattaneh Mikaeili, Bahador Sarkari, Francesca Tamarozzi. Design and expression of a chimeric recombinant antigen (SsIR-Ss1a) for the serodiagnosis of human strongyloidiasis: Evaluation of performance, sensitivity, and specificity. PLoS Negl Trop Dis 2024;18:e0012320
    https://doi.org/10.1371/journal.pntd.0012320
  37. Habiba Naz, Rimsha Timotheous, Muhammad Farhan Sarwar, Tariq Nadeem, Mudassar Fareed Awan, Sajed Ali, Sophia Awais, Irfan Ahmed, Sheikh Arslan Sehgal. Utilizing the subtractive proteomics approach to design ensemble vaccine against Candida lusitaniae for immune response stimulation; a bioinformatics study. PLoS ONE 2025;20:e0316264
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  38. Zeynab Bayat, Zahra Majidi, Amir Taherkhani, Lida Samie. Engineering a Novel T‐Cell Epitope‐Based Vaccine Targeting PRAME in Cancer Immunotherapy. Peptide Science 2025;117
    https://doi.org/10.1002/pep2.24393
  39. Marzieh Asadi, Younes Ghasemi, Navid Nezafat, Bahador Sarkari, Maryam Baneshi, Zohreh Mostafavi‐Pour, Mohammad Hossein Anbardar, Amir Savardashtaki. Designing a novel multi‐epitope antigen for diagnosing human cytomegalovirus infection: An immunoinformatics approach. Biotech and App Biochem 2024
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