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BIO DESIGN

pISSN 2288-6982
eISSN 2288-7105

Article

Article

Mini review

BioDesign 2021; 9(1): 1-13

Published online March 30, 2021

https://doi.org/10.34184/kssb.2021.9.1.1

© Korean Society for Structural Biology

Structure-function relationships of SMC protein complexes for DNA loop extrusion

Hansol Lee1, Haemin Noh1 and Je-Kyung Ryu2,*

1Department of Biological Sciences, KAIST, Daejeon 34141, Republic of Korea
2Department of Bionanoscience, Kavli Institute for Nanoscience, Delft University of Technology, 2628 CJ Delft, The Netherlands

Correspondence to: workrjk@gmail.com

Received: February 25, 2021; Revised: March 17, 2021; Accepted: March 19, 2021

Abstract

Structural Maintenance of Chromosome (SMC) complexes are vital for chromosome organization. They extrude DNA loops to compact 2 meters of DNA into a micrometer-sized chromosome structure. The DNA loop extrusion process is believed to be a universal mechanism of SMC complexes for spatiotemporal chromosome organization conserved in almost all species from prokaryotes to eukaryotes. However, the molecular mechanism of DNA loop extrusion by SMC complexes is under debate; various tentative mechanistic models have been suggested, but there is no clear consensus. Here, we review the structural studies of various SMC complexes from prokaryotes to eukaryotes to understand the structurefunction relationships of SMC complexes involved in DNA loop extrusion. We introduce controversial observations of the conformations of SMC complexes based on previous reports and discuss various proposed mechanisms of DNA loop extrusion suggested by experimental observations of the conformations of diverse SMC complexes.